2025
- Arce P, Archer J W, Arsini L, Bagulya A, Bolst D, Brown J M C, Caccia B, Chacon A, Cirrone G A P, Cortés-Giraldo M A, Cutajar D, Cuttone G, Dondero P, Dotti A, Faddegon B, Fattori S, Fedon C, Guatelli S, Haga A, Incerti S, Ivanchenko V, Konstantinov D, Kyriakou I, Le A, Li Z, Maire M, Malaroda A, Mancini-Terracciano C, Mantero A, Michelet C, Milluzzo G, Nicolanti F, Novak M, Omachi C, Pandola L, Pensavalle J H, Perales Á, Perrot Y, Petringa G, Pozzi S, Quesada J M, Ramos-Méndez J, Romano F, Rosenfeld A B, Safavi-Naeini M, Sakata D, Sarmiento L G, Sasaki T, Sato Y, Sciuto A, Sechopoulos I, Simpson E C, Stanzani R, Tomal A, Toshito T, Tran H N, White C and Wright D H Results of a Geant4 benchmarking study for bio‐medical applications, performed with the G4‐Med system. pp:1-55. Online: https://aapm.onlinelibrary.wiley.com/doi/10.1002/mp.17678
- Shin W-G, D-Kondo J N, Ramos-Méndez J, LaVerne J A, Rothwell B, Bertolet A, McNamara A, Faddegon B, Paganetti H and Schuemann J 2025 Investigation of hydrogen peroxide yields and oxygen consumption in high dose rate irradiation: a TOPAS-nBio Monte Carlo study Phys. Med. Biol. 70 015012 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ad9ce2
- D-Kondo N, Borys D, Rucinski A, Brzozowska B, Masilela T, Grochowska M, Wegrzyn M, Ramos-Mendez J 2025 Effect of FLASH dose-rate and oxygen concentration in the production of H2O2 in cellular-like media versus water: a Monte Carlo track-structure study Online: https://doi.org/10.1088/1361-6560/ada517
2024
- Ortiz R and Ramos-Méndez J 2024 Tumor growth and vascular redistribution contributes to the dosimetric preferential effect of microbeam radiotherapy: a Monte Carlo study Sci Rep 14 26585 Online: https://www.nature.com/articles/s41598-024-77415-5
- D-Kondo N, Ortiz R, Faddegon B, Incerti S, Tran H N, Francis Z, Moreno Barbosa E, Schuemann J and Ramos-Méndez J 2024 Lithium inelastic cross-sections and their impact on micro and nano dosimetry of boron neutron capture Phys. Med. Biol. 69 145016 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ad5f72
- D-Kondo N, Masilela T A M, Shin W-G, Faddegon B, LaVerne J, Schuemann J and Ramos-Mendez J 2024 Modeling the oxygen effect in DNA strand break induced by gamma-rays with TOPAS-nBio Phys. Med. Biol. 69 215028 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ad5f72
- García O R G, Ortiz R, Moreno-Barbosa E, D-Kondo N, Faddegon B and Ramos-Méndez J 2024 TOPAS-Tissue: A Framework for the Simulation of the Biological Response to Ionizing Radiation at the Multi-Cellular Level Int. J. Mol. Sci. Online: https://iopscience.iop.org/article/10.1088/1361-6560/ad87a7
- Ortiz R and Ramos-Méndez J 2024 A clustering tool for generating biological geometries for computational modeling in radiobiology Phys. Med. Biol. 69 21NT01 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ad7f1d
- Ortiz R, Sawkey D, Faddegon B, D-Kondo N and Ramos-Méndez J 2024 An interface tool to parametrize treatment plans for the TrueBeam radiotherapy system into TOPAS parameter control files for Monte Carlo simulation Physica Medica 124 104485 Online: https://linkinghub.elsevier.com/retrieve/pii/S1120179724002308
- Ramos-Mendez J, Ortiz C R, Schuemann J, Paganetti H and Faddegon B 2024 TOPAS simulation of photoneutrons in radiotherapy: accuracy and speed with variance reduction Phys. Med. Biol. 69 11NT01 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ad4303
- Sakata D, Hirayama R, Shin W-G, Belli M, Tabocchini M A, Stewart R D, Belov O, Bernal M A, Bordage M-C, Brown J M C, Dordevic M, Emfietzoglou D, Francis Z, Guatelli S, Inaniwa T, Ivanchenko V, Karamitros M, Kyriakou I, Lampe N, Li Z, Meylan S, Michelet C, Nieminen P, Perrot Y, Petrovic I, Ramos-Mendez J, Ristic-Fira A, Santin G, Schuemann J, Tran H N, Villagrasa C and Incerti S 2024 Corrigendum to “Prediction of DNA rejoining kinetics and cell survival after proton irradiation for V79 cells using Geant4-DNA” [Phys. Med. 105 (2023) 102508] Physica Medica 103375 Online: https://linkinghub.elsevier.com/retrieve/pii/S1120179724001704
- Tran H N, Archer J, Baldacchino G, Brown J M C, Chappuis F, Cirrone G A P, Desorgher L, Dominguez N, Fattori S, Guatelli S, Ivantchenko V, Méndez J, Nieminen P, Perrot Y, Sakata D, Santin G, Shin W, Villagrasa C, Zein S and Incerti S 2024 Review of chemical models and applications in Geant4‐DNA: Report from the ESA BioRad III Project Medical Physics mp.17256 Online: https://aapm.onlinelibrary.wiley.com/doi/10.1002/mp.17256
2023
- Faddegon B, Descovich M, Chen K, Ramos‐Méndez J, Iii M R, Wahl N, Taylor P, Griffin K and Lee C 2023 A digital male pelvis phantom series showing anatomical variations over the course of fractionated radiotherapy treatment Medical Physics mp.16865 Online: https://aapm.onlinelibrary.wiley.com/doi/10.1002/mp.16865
- Faddegon B, Blakely E A, Burigo L, Censor Y, Dokic I, Domínguez Kondo N, Ortiz R, Ramos Méndez J, Rucinski A, Schubert K, Wahl N and Schulte R 2023 Ionization detail parameters and cluster dose: a mathematical model for selection of nanodosimetric quantities for use in treatment planning in charged particle radiotherapy Phys. Med. Biol. 68 175013 Online: https://iopscience.iop.org/article/10.1088/1361-6560/acea16
- Carrasco-Hernandez J, Ramos-Méndez J, Padilla-Rodal E and Avila-Rodriguez M A 2023 Cellular lethal damage of 64Cu incorporated in mammalian genome evaluated with Monte Carlo methods Front. Med. 10 1253746 Online: https://www.frontiersin.org/articles/10.3389/fmed.2023.1253746/full
- D-Kondo J N, Garcia-Garcia O R, LaVerne J A, Faddegon B, Schuemann J, Shin W-G and Ramos-Méndez J 2023 An integrated Monte Carlo track-structure simulation framework for modeling inter and intra-track effects on homogenous chemistry Phys. Med. Biol. 68 125008 Online: https://iopscience.iop.org/article/10.1088/1361-6560/acd6d0
- Han Y, Geng C, D-Kondo J N, Li M, Ramos-Méndez J, Altieri S, Liu Y and Tang X 2023 Microdosimetric analysis for boron neutron capture therapy via Monte Carlo track structure simulation with modified lithium cross-sections Radiation Physics and Chemistry 209 110956 Online: https://linkinghub.elsevier.com/retrieve/pii/S0969806X23002013
- Lee H, Cheon B-W, Feld J W, Grogg K, Perl J, Ramos-Méndez J A, Faddegon B, Min C H, Paganetti H and Schuemann J 2023 TOPAS-imaging: extensions to the TOPAS simulation toolkit for medical imaging systems Phys. Med. Biol. 68 084001 Online: https://iopscience.iop.org/article/10.1088/1361-6560/acc565
- Ramos-Mendez J 2023 Dosimetric characterization of single- and dual-port temporary tissue expanders for postmastectomy radiotherapy using Monte Carlo methods Frontiers in Oncology
- Sakata D, Hirayama R, Shin W-G, Belli M, Tabocchini M A, Stewart R D, Belov O, Bernal M A, Bordage M-C, Brown J M C, Dordevic M, Emfietzoglou D, Francis Z, Guatelli S, Inaniwa T, Ivanchenko V, Karamitros M, Kyriakou I, Lampe N, Li Z, Meylan S, Michelet C, Nieminen P, Perrot Y, Petrovic I, Ramos-Mendez J, Ristic-Fira A, Santin G, Schuemann J, Tran H N, Villagrasa C and Incerti S 2023 Prediction of DNA rejoining kinetics and cell survival after proton irradiation for V79 cells using Geant4-DNA Physica Medica 105 102508 Online: https://linkinghub.elsevier.com/retrieve/pii/S1120179722021032
2022
- Nanni E, Tantawi S, Loo B, Snively E, Schulte R, Faddegon B, Pankuch M, Li Z, Dolgashev V and Ramos J 2022 FLASH Modalities Track (Oral Presentations) 3D HIGH SPEED RF BEAM SCANNER FOR HADRON THERAPY OF CANCER Physica Medica 94 S45–6 Online: https://linkinghub.elsevier.com/retrieve/pii/S1120179722015320
- Ramos-Méndez J, García-García O, Domínguez-Kondo J, LaVerne J A, Schuemann J, Moreno-Barbosa E and Faddegon B 2022 TOPAS-nBio simulation of temperature-dependent indirect DNA strand break yields Phys. Med. Biol. 67 145007 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ac79f9
2021
- Arce P, Bolst D, Bordage M, Brown J M C, Cirrone P, Cortés‐Giraldo M A, Cutajar D, Cuttone G, Desorgher L, Dondero P, Dotti A, Faddegon B, Fedon C, Guatelli S, Incerti S, Ivanchenko V, Konstantinov D, Kyriakou I, Latyshev G, Le A, Mancini‐Terracciano C, Maire M, Mantero A, Novak M, Omachi C, Pandola L, Perales A, Perrot Y, Petringa G, Quesada J M, Ramos‐Méndez J, Romano F, Rosenfeld A B, Sarmiento L G, Sakata D, Sasaki T, Sechopoulos I, Simpson E C, Toshito T and Wright D H 2021 Report on G4‐Med, a Geant4 benchmarking system for medical physics applications developed by the Geant4 Medical Simulation Benchmarking Group Medical Physics 48 19–56 Online: https://onlinelibrary.wiley.com/doi/abs/10.1002/mp.14226
- Bertolet A, Ramos-Méndez J, Paganetti H and Schuemann J 2021 The relation between microdosimetry and induction of direct damage to DNA by alpha particles Phys. Med. Biol. 66 155016 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ac15a5
- Berumen F, Ma Y, Ramos-Méndez J, Perl J and Beaulieu L 2021 Validation of the TOPAS Monte Carlo toolkit for HDR brachytherapy simulations Brachytherapy 8–10
- D-Kondo N, Moreno-Barbosa E, Štěphán V, Stefanová K, Perrot Y, Villagrasa C, Incerti S, De Celis Alonso B, Schuemann J, Faddegon B and Ramos-Méndez J 2021 DNA damage modeled with Geant4-DNA: effects of plasmid DNA conformation and experimental conditions Phys. Med. Biol. 66 245017 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ac3a22
- Kim M M, Darafsheh A, Schuemann J, Dokic I, Lundh O, Zhao T, Ramos-Mendez J, Dong L and Petersson K 2021 Development of Ultra-High Dose Rate (FLASH) Particle Therapy IEEE Trans. Radiat. Plasma Med. Sci. 1–1 Online: https://ieeexplore.ieee.org/document/9462499/
- von der Linden J, Ramos-Méndez J, Faddegon B, Massin D, Fiksel G, Holder J P, Willingale L, Peebles J, Edwards M R and Chen H 2021 Dispersion calibration for the National Ignition Facility electron–positron–proton spectrometers for intense laser matter interactions Review of Scientific Instruments 92 033516 Online: https://aip.scitation.org/doi/10.1063/5.0040624
- Perry C C, Ramos-Méndez J and Milligan J R 2021 Boronated Condensed DNA as a Heterochromatic Radiation Target Model Biomacromolecules acs.biomac.1c00106 Online: https://pubs.acs.org/doi/10.1021/acs.biomac.1c00106
- Ramos-Mendez J A, LaVerne J A, Domínguez-Kondo J N, Milligan J, Stepan V, Stefanová K, Perrot Y, Villagrasa C, Shin W-G, Incerti S, McNamara A L, Paganetti H, Perl J, Schuemann J and Faddegon B A 2021 TOPAS-nBio validation for simulating water radiolysis and DNA damage under low-LET irradiation Phys. Med. Biol. Online: https://iopscience.iop.org/article/10.1088/1361-6560/ac1f39
- Shin W-G 2021 Geant4-DNA simulation of the pre-chemical stage of water radiolysis and its impact on initial radiochemical yields Physica Medica 5
- Tran H N, Ramos‐Méndez J, Shin W, Perrot Y, Faddegon B, Okada S, Karamitros M, Davídková M, Štěpán V, Incerti S and Villagrasa C 2021 Assessment of DNA damage with an adapted independent reaction time approach implemented in Geant4‐DNA for the simulation of diffusion‐controlled reactions between radio‐induced reactive species and a chromatin fiber Medical Physics 48 890–901 Online: https://onlinelibrary.wiley.com/doi/10.1002/mp.14612
- Villagomez-Bernabe B, Ramos-Méndez J and Currell F J 2021 On the Equivalence of the Biological Effect Induced by Irradiation of Clusters of Heavy Atom Nanoparticles and Homogeneous Heavy Atom-Water Mixtures Cancers 13 2034 Online: https://www.mdpi.com/2072-6694/13/9/2034
2020
- Zhu H, McNamara A L, McMahon S J, Ramos-Mendez J, Henthorn N T, Faddegon B, Held K D, Perl J, Li J, Paganetti H and Schuemann J 2020 Cellular Response to Proton Irradiation: A Simulation Study with TOPAS-nBio Radiation Research 194 9 Online: http://www.rrjournal.org/doi/10.1667/RR15531.1
- Carrasco-Hernández J, Ramos-Méndez J, Faddegon B, Jalilian A R, Moranchel M and Ávila-Rodríguez M A 2020 Monte Carlo track-structure for the radionuclide Copper-64: characterization of S-values, nanodosimetry and quantification of direct damage to DNA Physics in Medicine & Biology 65 155005 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ab8aaa
- Zhu H, McNamara A L, Ramos-Mendez J, McMahon S J, Henthorn N T, Faddegon B, Held K D, Perl J, Li J, Paganetti H and Schuemann J 2020 A parameter sensitivity study for simulating DNA damage after proton irradiation using TOPAS-nBio Physics in Medicine & Biology 65 085015 Online: https://iopscience.iop.org/article/10.1088/1361-6560/ab7a6b
- Faddegon B, Ramos-Méndez J, Schuemann J, McNamara A, Shin J, Perl J and Paganetti H 2020 The TOPAS tool for particle simulation, a Monte Carlo simulation tool for physics, biology and clinical research Physica Medica 72 114–21 Online: https://doi.org/10.1016/j.ejmp.2020.03.019
- Ivanchenko V, Bagulya A, Bakr S, Bandieramonte M, Bernard D, Bordage M-C, Burkhardt H, Dondero P, Grichine V, Guatelli S, Hřivnáčová I, Incerti S, Kadri O, Konstantinov D, Kyriakou I, Maire M, Mantero A, RamosMendez J, Novak M, Pandola L, Sakata D, Sawkey D, Semeniouk I, Shin W G, Tran N H and Urban L 2020 Geant4 electromagnetic physics progress ed C Doglioni, D Kim, G A Stewart, L Silvestris, P Jackson and W Kamleh EPJ Web of Conferences 245 02009 Online: https://www.epj-conferences.org/10.1051/epjconf/202024502009
- Karamitros M, Brown J, Lampe N, Sakata D, Tran N H, Shin W-G, Mendez J R, Guatelli S, Incerti S and LaVerne J A 2020 Implementing the Independent Reaction Time method in Geant4 for radiation chemistry simulations
- Moreno-Barbosa F, de Celis-Alonso B, Moreno-Barbosa E, Hernández-López J M, Geoghegan T and Ramos-Méndez J 2020 Monte Carlo simulation of the effect of magnetic fields on brachytherapy dose distributions in lung tissue material ed R Zhang PLOS ONE 15 e0238704 Online: https://dx.plos.org/10.1371/journal.pone.0238704
- Perry C C, Ramos-Méndez J and Milligan J R 2020 DNA condensation with a boron-containing cationic peptide for modeling boron neutron capture therapy Radiation Physics and Chemistry 166 108521 Online: https://linkinghub.elsevier.com/retrieve/pii/S0969806X19311417
- Ramos-Méndez J, Domínguez-Kondo N, Schuemann J, McNamara A, Moreno-Barbosa E and Faddegon Bruce 2020 LET-Dependent Intertrack Yields in Proton Irradiation at Ultra-High Dose Rates Relevant for FLASH Therapy Radiation Research 194 5–7 Online: https://bioone.org/journals/radiation-research/volume-194/issue-4/RADE-20-00084.1/LET-Dependent-Intertrack-Yields-in-Proton-Irradiation-at-Ultra-High/10.1667/RADE-20-00084.1.full
- Ramos-Mendez J, Shin J, Perl J, Paganetti H and Faddegon B 2020 Proceedings to the 58th Annual Conference of the Particle Therapy Cooperative Group (PTCOG58) International Journal of Particle Therapy 6 45–491 Online: https://meridian.allenpress.com/theijpt/article/6/4/45/436001/Proceedings-to-the-58th-Annual-Conference-of-the
- Ramos‐Méndez J, Shin W, Karamitros M, Domínguez‐Kondo J, Tran N H, Incerti S, Villagrasa C, Perrot Y, Štěpán V, Okada S, Moreno‐Barbosa E and Faddegon B 2020 Independent reaction times method in Geant4‐DNA: Implementation and performance Medical Physics 47 5919–30 Online: https://onlinelibrary.wiley.com/doi/10.1002/mp.14490
2019
- Moya-Sánchez E U, Maciel-Hernández A M, Niebla A S, Ramos-Méndez J and Carbajal-Espinosa O 2019 Monte Carlo Geometry Modeling for Particle Transport Using Conformal Geometric Algebra Advances in Applied Clifford Algebras 29 26 Online: http://link.springer.com/10.1007/s00006-019-0939-2
- Rudek B, McNamara A, Ramos-Méndez J, Byrne H, Kuncic Z and Schuemann J 2019 Radio-enhancement by gold nanoparticles and their impact on water radiolysis for x-ray, proton and carbon-ion beams Physics in Medicine & Biology 64 175005 Online: http://iopscience.iop.org/article/10.1088/1361-6560/ab314c
- Shin W-G, Ramos-Mendez J, Faddegon B, Tran H N, Villagrasa C, Perrot Y, Okada S, Karamitros M, Emfietzoglou D, Kyriakou I, Bordage M C, Sakata D, Guatelli S, Choi H J, Min C H, Lee S B and Incerti S 2019 Evaluation of the influence of physical and chemical parameters on water radiolysis simulations under MeV electron irradiation using Geant4-DNA Journal of Applied Physics 126 114301 Online: http://aip.scitation.org/doi/10.1063/1.5107511
2018
- Schuemann J, McNamara A L, Warmenhoven J W, Henthorn N T, Kirkby K J, Merchant M J, Ingram S, Paganetti H, Held K D, Ramos-Mendez J, Faddegon B, Perl J, Goodhead D T, Plante I, Rabus H, Nettelbeck H, Friedland W, Kundrát P, Ottolenghi A, Baiocco G, Barbieri S, Dingfelder M, Incerti S, Villagrasa C, Bueno M, Bernal M A, Guatelli S, Sakata D, Brown J M C, Francis Z, Kyriakou I, Lampe N, Ballarini F, Carante M P, Davídková M, Štěpán V, Jia X, Cucinotta F A, Schulte R, Stewart R D, Carlson D J, Galer S, Kuncic Z, Lacombe S, Milligan J, Cho S H, Sawakuchi G, Inaniwa T, Sato T, Li W, Solov’yov A V, Surdutovich E, Durante M, Prise K M and McMahon S J 2018 A New Standard DNA Damage (SDD) Data Format Radiation Research 191 76 Online: http://www.rrjournal.org/doi/10.1667/RR15209.1
- Schuemann J, McNamara A L, Ramos-Méndez J, Perl J, Held K D, Paganetti H, Incerti S and Faddegon B 2018 TOPAS-nBio: An Extension to the TOPAS Simulation Toolkit for Cellular and Sub-cellular Radiobiology Radiation Research 191 125 Online: http://www.rrjournal.org/doi/10.1667/RR15226.1
- Ramos-Méndez J, Burigo L, Schulte R, Chuang C and Faddegon Bruce 2018 Fast calculation of nanodosimetric quantities in treatment planning of proton and heavy-ion therapy Phys. Med. Biol
- Ramos-Méndez J, Perl J, Schuemann J, McNamara A, Paganetti H and Faddegon B 2018 Monte Carlo simulation of chemistry following radiolysis with TOPAS-nBio Physics in Medicine & Biology 63 105014 Online: http://iopscience.iop.org/article/10.1088/1361-6560/aac04c
- Burigo L, Ramos-Méndez J, Bangert M, Schulte R and Faddegon B 2018 Simultaneous optimization of RBE-weighted dose and nanodosimetric ionization distributions in treatment planning with carbon ions Physics in Medicine and Biology
- McNamara A L, Ramos-Méndez J, Perl J, Held K, Dominguez N, Moreno E, Henthorn N T, Kirkby K J, Meylan S, Villagrasa C, Incerti S, Faddegon B, Paganetti H and Schuemann J 2018 Geometrical structures for radiation biology research as implemented in the TOPAS-nBio toolkit Physics in Medicine & Biology 63 175018 Online: http://iopscience.iop.org/article/10.1088/1361-6560/aad8eb
- Piersimoni P, Faddegon B A, Méndez J R, Schulte R W, Volz L and Seco J 2018 Helium CT: Monte Carlo simulation results for an ideal source and detector with comparison to proton CT Medical Physics 45 3264–74 Online: http://doi.wiley.com/10.1002/mp.12942
2017
- McNamara A, Geng C, Turner R, Mendez J R, Perl J, Held K, Faddegon B, Paganetti H and Schuemann J 2017 Validation of the radiobiology toolkit TOPAS-nBio in simple DNA geometries Physica Medica 33 207–15 Online: http://linkinghub.elsevier.com/retrieve/pii/S1120179716311176
- Piersimoni P, Ramos-Méndez J, Geoghegan T, Bashkirov V A, Schulte R W and Faddegon B A 2017 The effect of beam purity and scanner complexity on proton CT accuracy Medical Physics 44 284–98 Online: http://doi.wiley.com/10.1002/mp.12013
- Ramos-Méndez J, Schuemann J, Incerti S, Paganetti H, Schulte R and Faddegon B 2017 Flagged uniform particle splitting for variance reduction in proton and carbon ion track-structure simulations Physics in Medicine & Biology 62 5908–25 Online: http://iopscience.iop.org/0031-9155/62/15/5908
2016
- Barbosa F M, López J M H, de Celis Alonso B and Méndez J R 2016 Modeling the effects of magnetic fields on clinical brachytherapy with Monte Carlo methods AIP Conference Proceedings vol 1747 p 090008 Online: http://aip.scitation.org/doi/abs/10.1063/1.4954141
- García J G S, López J M H, Barbosa E M, Méndez J R and Alonso B D C 2016 Diagnosis of ADHD children by wavelet analysis AIP Conference Proceedings vol 1747 p 030003 Online: http://aip.scitation.org/doi/abs/10.1063/1.4954096
- Geng C, Moteabbed M, Seco J, Gao Y, George Xu X, Ramos-Méndez J, Faddegon B and Paganetti H 2016 Dose assessment for the fetus considering scattered and secondary radiation from photon and proton therapy when treating a brain tumor of the mother. Physics in medicine and biology 61 683–95 Online: http://ovidsp.ovid.com/ovidweb.cgi?T=JS&PAGE=reference&D=prem&NEWS=N&AN=26716718
- Piersimoni P, Geoghegan T, Ramos-Méndez J, Bashkirov V, Schulte R and Faddegon B 2016 Proceedings to the 55 th Annual Meeting for the Particle Therapy Cooperative Group (PTCOG) International Journal of Particle Therapy 3 71–276 Online: http://theijpt.org/doi/10.14338/IJPT.16-PTCOG-1.1
2015
- Ramos-Méndez J, Perl J, Schümann J, Shin J, Paganetti H and Faddegon B 2015 Improved efficiency in Monte Carlo simulation for passive-scattering proton therapy Physics in Medicine and Biology 60 5019–35 Online: http://stacks.iop.org/0031-9155/60/i=13/a=5019?key=crossref.eb2174db1a596ab8b88680fdbb503f22
- Ramos-Méndez J, Perl J, Schümann J, Shin J, Paganetti H and Faddegon B 2015 A framework for implementation of organ effect models in TOPAS with benchmarks extended to proton therapy Physics in Medicine and Biology 60 5037–52 Online: http://stacks.iop.org/0031-9155/60/i=13/a=5037?key=crossref.14dad0c2c321c20ce411d50365d726ff
- Faddegon B a., Shin J, Castenada C M, Ramos-Méndez J and Daftari I K 2015 Experimental depth dose curves of a 67.5 MeV proton beam for benchmarking and validation of Monte Carlo simulation Medical Physics 42 4199–210 Online: http://scitation.aip.org/content/aapm/journal/medphys/42/7/10.1118/1.4922501
- Polster L, Schuemann J, Rinaldi I, Burigo L, McNamara A L, Stewart R D, Attili A, Carlson D J, Sato T, Ramos Méndez J, Faddegon B, Perl J and Paganetti H 2015 Extension of TOPAS for the simulation of proton radiation effects considering molecular and cellular endpoints. Physics in medicine and biology 60 5053–70 Online: http://stacks.iop.org/0031-9155/60/i=13/a=5053
- Ramos-Mendez J, Paganetti H and Faddegon B 2015 SU-E-T-554: Monte Carlo Calculation of Source Terms and Attenuation Lengths for Neutrons Produced by 50-200 MeV Protons On Brass Medical Physics 42 3463–3463 Online: https://aapm.onlinelibrary.wiley.com/doi/abs/10.1118/1.4924916
2014
- I. G G D, E. M B, Hernández M I M, Méndez J R, Silvia H T, Pilar D S, Eduardo B P and Benito D C A 2014 Difference between healthy children and ADHD based on wavelet spectral analysis of nuclear magnetic resonance images AIP Conference Proceedings vol 1626 pp 117–20 Online: http://aip.scitation.org/doi/abs/10.1063/1.4901373
2013
- Ramos-Méndez J, Perl J, Faddegon B, Schümann J and Paganetti H 2013 Geometrical splitting technique to improve the computational efficiency in Monte Carlo calculations for proton therapy Medical Physics 40 041718 Online: http://scitation.aip.org/content/aapm/journal/medphys/40/4/10.1118/1.4795343
- Ramos‐mendez J, Perl J, Schuemann J, Shin J, Faddegon B and Paganetti H 2013 WE‐C‐108‐07: Optimal Parameters for Variance Reduction in Monte Carlo Simulations for Proton Therapy Medical Physics 40